computational biophysics

1. Contact analysis

2. Secondary structure analysis using STRIED in VMD

3. Secondary structure analysis using DSSP

4. Intrinsically disordered protein trajectory analysis

5. Important VMD tricks

6. Markvos models for biomolecule conformational transistions sampled from MD

machine learning

1. Machine Learning basis

softwares

1. Matplotlib practices

2. obsidian practices

3. Conda environment settings

4. Quick Gnuplot tricks