computational biophysics

1. Contact analysis

2. Secondary structure analysis using DSSP

3. Secondary structure analysis using STRIDE in VMD

4. Intrinsically disordered protein trajectory analysis

5. Important VMD tricks

6. Markov State Models for biomolecule conformational transitions sampled from MD

machine learning

1. Machine Learning Basics

softwares

1. Matplotlib practices

2. Obsidian Practices

3. Conda environment settings

4. Quick Gnuplot tricks